Sunday |
2:00-11:00pm | Arrival and Registration |
4:00-6:00pm | Reception |
6:00pm | Dinner |
7:30-9:40pm | Surveying Molecular Information in Cells |
| Discussion Leader: Jeffrey Thomas |
7:30pm | Welcome and Orientation |
7:40pm | Toni Kazic, Washington University, St. Louis Understanding Biochemical Networks |
8:10pm | Discussion |
8:20pm | Neil Clarke, Johns Hopkins University DNA Binding specificity in a genome sequence context: Understanding transcriptional regulation |
8:50pm | Discussion |
9:00pm | John Tyson, Virginia Tech Modeling the Eukaryotic Cell Cycle: An Example of the 'Last Step' in Computational Molecular Biology |
9:30pm | Discussion |
Monday |
7:30-8:30am | Breakfast |
8:30am | Conference Photo |
9:00am-12:30pm | Biophysics of Molecular Interaction |
| Discussion Leader: James Anderson |
9:00am | Peter Uetz, University of Washington Protein interactions and prediction of protein function in yeast |
9:45am | Discussion |
10:00am | Coffee Break |
10:30am | Andrey Levchenko, Cal Tech Scaffold and Adaptor Proteins in Signal Transduction: Helping to Decide Where, When and How Much |
11:15am | Discussion |
11:30am | Dagmar Ringe, Brandeis University From Sequence to Function, How Easy Is It? |
12:15pm | Discussion |
12:30-1:30pm | Lunch |
4:00-6:00pm | Poster Session I |
6:00 | Dinner |
7:30-9:30pm | New Biological Insights from Primary Measurements |
| Discussion Leader: Andrey Rzhetsky |
7:30pm | Jeremy Nicholson, Imperial College of Medicine Metabonomics, an Integrated Systems Approach to Understanding Metabolic Responses to Disease Processes and Gene Function |
8:15pm | Discussion |
8:30pm | Joerg Bernhardt, Institut für Mikrobiologie, Universität Greifswald Accessing and analysing a bacterial proteome - Proteomics of Bacillus subtilis |
9:15pm | Discussion |
Tuesday |
7:30-8:30am | Breakfast |
9:00am-12:30pm | Designing Data Relations for Optimal Understanding |
| Discussion Leader: Ruth VanBogelen |
9:00am | Brian Davis, Proteome, Inc. From Information to Knowledge: Coupling curation technologies with data relations and presentation format for optimal understanding of protein functions and pathways. |
9:45am | Discussion |
10:00am | Coffee Break |
10:30am | Shankar Subramanian, UCSD Designing knowledge bases for cellular signaling |
11:15am | Discussion |
11:30am | Pedro Romero, SRI International The EcoCyc Database and the Pathway Tools Software. |
12:15pm | Discussion |
12:30-1:30pm | Lunch |
4:00-6:00pm | Poster Session II |
6:00 | Dinner |
7:30-9:30pm | Deduction of Biological Networks |
| Discussion Leader: Greg Stephanopoulos |
7:30pm | David Gifford, MIT Principled Techniques for Genetic Regulatory Circuit Discovery. |
8:15pm | Discussion |
8:30pm | Trey Ideker, Univ Washington Prediction of gene expression using integrated physical-interaction networks |
9:15pm | Discussion |
Wednesday |
7:30-8:30am | Breakfast |
9:00am-12:30pm | Predictive Algorithms and Computational Methods |
| Discussion Leader: Shankar Subramanian |
9:00am | Kimmen Sjolander, Celera Genomics High-throughput functional classification of proteins |
9:45am | Discussion |
10:00am | Coffee Break |
10:30am | Inna Dubchak, Lawrence Berkeley National Labs Comparative Genomics Tools for Biological Discovery. |
11:15am | Discussion |
11:30am | Greg Stephanopoulos, MIT, Boston Pattern discovery in DNA microarray data |
12:15pm | Discussion |
12:30-1:30pm | Lunch |
5:00-6:00pm | Business Meeting |
6:00 | Dinner |
7:30-9:30pm | Modeling Single Cells |
| Discussion Leader: Leslie Loew |
7:30pm | Adam Arkin, University of California, Berkeley Convergent Behavior in Divergent Pathways: Comparative Signal Transduction in Bacteria |
8:15pm | Discussion |
8:30pm | Jose Vilar, Princeton University Computational Molecular Biology: Networking with noise at the molecular, cellular, and population level. |
9:15pm | Discussion |
Thursday |
7:30-8:30am | Breakfast |
9:00am-12:30pm | Spatial and Whole-Genome Modeling |
| Discussion Leader: Robert Stengel |
9:00am | Drew Endy, Molecular Sciences Institute, Berkeley Models and Experiments for Bacteriophage T7 Development and Yeast Pheromone Signal Transduction |
9:45am | Discussion |
10:00am | Coffee Break |
10:30am | Masura Tomita, Keio University E-CELL Project: Towards whole cell simulation |
11:15am | Discussion |
11:30am | Leslie Loew, University of Connecticut The Virtual Cell: A software environment for cell biological modeling. |
12:15pm | Discussion |
12:30-1:30pm | Lunch |
4:00-6:00pm | Poster Session III |
6:00 | Dinner |
7:30-9:30pm | Cross-Scale Modeling |
| Discussion Leader: Adam Arkin |
7:30pm | TBA |
| Discussion |
8:30pm | Cynthia Stokes, Entellos, Inc. Predictive model of asthma: from genes to physiology. |
9:15pm | Discussion |
Friday |
7:30-8:30am | Breakfast |